File List

Here is a list of all documented files with brief descriptions:

[detail level 12345]

Src
Chombo
PatchRK.3D.cpp	Implements a RK-midpoint time stepping routine
PatchTools.cpp	Contains some implementation of the PatchPluto class
Cooling
MINEq
cooling.h
cooling_defs.h
Power_Law
cooling.h
SNEq
cooling.h
Tab
cooling.h
Fargo
2DParallel
fargo.h
fargo.c	Solves the linear transport step of the FARGO-MHD algorithm
fargo.h	FARGO-MHD module header file
fargo_velocity.c	Functions for computing/retrieving the mean aziumthal velocity
HD
eigenv.c	Wave-speeds and characteristic decomposition for the HD equations
eos.c	Collect various thermodynamic functions for the HD module
fluxes.c	Compute the hydro (HD) flux
mappers.c	Convert between primitive and conservative variables
mappers.v00.c	Conversion between primitive and conservative variables
mod_defs.h
prim_eqn.c	Compute the right hand side of the primitive HD equations
rhs.c	Compute the right hand side of the conservative HD/MHD equations
MHD
CT
ct.c	Update staggered magnetic field
ct.h	Header file for Constrained-Transport (CT) module
ct_emf.c	Store or retrieve the Electromotive Force (EMF)
ct_emf_average.c	Collects different EMF averaging schemes
ct_field_average.c	Performs various magnetic field averaging operations
ct_fill_mag_field.c	Fill normal staggered component in the ghost zones
GLM
glm.c	GLM module implementation
glm.h	Header file for GLM Divergence Cleaning
Resistive
res.h	Resistive MHD module header file
res_flux.c	Compute the resistive MHD flux
res_functions.c	Compute the electric current
ShearingBox
2DParallel
shearingbox.h
sb_boundary.c	Wrapper function to assign shearing-box boundary conditions
sb_flux.c	Enforce conservation at the X1 boundaries in the shearing-box module
sb_tools.c	Miscellaneous functions for implementing the shearing-box boundary condition
shearingbox.h	Shearing-Box module header file
eigenv.c	Wave-speeds and characteristic decomposition for the MHD equations
eos.c	Collect various thermodynamic functions for the MHD module
fluxes.c	Compute the MHD flux
mappers.c	Convert between primitive and conservative variables
mod_defs.h	Set labels, indexes and prototypes for the MHD module
prim_eqn.c	Compute the right hand side of the primitive MHD equations
rhs.c	Compute the right hand side of the conservative HD/MHD equations
New
glm.c	GLM module implementation
main.c	PLUTO main function
Parallel
al.h	ArrayLib main header file
al_alloc.c	ArrayLib allocation routine
al_boundary.c	Check if the local beginnings or endings of an array correspond to the global beginnings or endings
al_codes.h	ArrayLib codes header file
al_decomp_.c	Miscellaneous of functions act to find the processors distribution
al_decompose.c	ArrayLib functions to decompose the domain among the MPI processes
al_defs.h	ArrayLib function definitions header file
al_exchange.c	Fill the ghost boundaries
al_exchange_dim.c	Fill the ghost boundaries along selected dimensions
al_finalize.c	ArrayLib Finalization routine
al_hidden.h	Internal include file for the ArrayLib
al_init.c	ArrayLib Initialization routines
al_io.c	Miscellaneous functions for IO operations
al_proto.h	ArrayLib function prototypes header file
al_sort_.c	Internal routine to sort an integer array
al_subarray_.c	Creates a datatype describing a subarray of a multidimensional array
al_sz_free.c	Dellocate a distributed array descriptor
al_sz_get.c	Miscellaneous functions to obtain informations about the properties of the distributed array
al_sz_init.c	Allocate and initialize a distributed array descriptor
al_sz_set.c	Miscellaneous functions to define the properties of the distributed array by setting various parameters via the isz descriptor
al_szptr_.c	Miscellaneous of internal routines to convert sz pointers to integer pointers
al_write_array_async.c	ArrayLib routines for asynchronous MPI-IO
Particles
particles.h
RHD
energy_solve.c	Inversion scheme for RHD using total energy density
entropy_solve.c	Inversion scheme for RHD using entropy
eos.c	Collect various thermodynamic functions for the RHD module
mappers.c	Convert between primitive and conservative variables
mod_defs.h
pressure_fix.c	Inversion scheme for RHD using a pressure fix
RMHD
eigenv.c	Compute the eigenvalues for the relativisitc MHD equations
energy_solve.c	Inversion scheme for RMHD using total energy density
entropy_solve.c	Inversion scheme for RMHD using entropy
eos.c	Collect various thermodynamic functions for the relativistic MHD module
mappers.c	Convert between primitive and conservative variables
mappers.v00.c	Convert between primitive and conservative variables
mod_defs.h	Module header file for relativistic MHD (RMHD)
pressure_fix.c	Inversion scheme for RMHD using a pressure fix
quartic.c	Solve quartic and cubic equations-
States
char_tracing.c	Compute time-centered interface states using characteristic tracing
hancock.c	MUSCL-Hancock predictor step
states_plm.c	Compute states using piece-wise linear interpolation
states_plm.v00.c	Compute states using piece-wise linear interpolation
Templates
init.c	Contains basic functions for problem initialization
Thermal_Conduction
tc.h	Thermal conduction (TC) module header file
tc_flux.c	Compute the thermal conduction flux
tc_kappa.c	Define the thermal conduction coefficients
Time_Stepping
sweep.c	Advance equations using a directionally-split method
unsplit.c	Advance equations using directionally-unsplit integrators (method of lines)
unsplit_ctu.c	Advance equations using Corner Transport Upwind (CTU)
Viscosity
eta_visc.c	Specification of explicit first and second viscosity coefficients
viscosity.h
viscous_flux.c	Compute viscosity fluxes
adv_flux.c	Compute flux for passive scalars
arrays.c	Memory allocation functions
bin_io.c	Functions for handling binary I/O
boundary.c	Set boundary conditions
cooling_source.c	Integrate cooling and reaction source terms
doxy-comment.c	Documentation template for C source files
entropy_switch.c	Flag zones where pressure is updated using entropy
fd_flux.c	Compute finite difference fluxes
flag.c	Flag database
get_nghost.c	Return the number of ghost zones
globals.h	Collects global variables definitions
hdf5_io.c	HDF5 I/O main driver
initialize.c	Initialize PLUTO
input_data.c	Provide basic functionality for reading input data files
int_bound_reset.c	Reset to zero the right hand side in the internal boundary
jet_domain.c	Adjust the effective domain size when the -xNjet option is given
main.c	PLUTO main function
parabolic_flux.c	Compute diffusion fluxes for explicit time stepping
parabolic_rhs.c	Compute right hand side for diffusion terms
pluto.h	PLUTO main header file
prototypes.h
restart.c	Restart PLUTO from binary or HDF5 double precision data files
rkc.c	Runge-Kutta-Chebyshev driver for integration of diffusion terms
set_geometry.c	Initialize geometry-dependent grid quantities
set_grid.c	Set up the global and local grids in the three coordinate directions
set_indexes.c	Perform index permutation and set domain integration indexes
set_output.c	Set/retrieve output data attributes
setup.c	Read runtime information from pluto.ini
show_config.c	Print useful information about the current computations
startup.c	Loop on the computational cells to assign initial conditions
sts.c	Super Time Stepping driver for integration of diffusion terms
tools.c	Collection of general-purpose functions
vec_pot_diff.c	Compute magnetic field from vector potential
vec_pot_update.c	Function to handle vector potential
write_data.c	Main output driver
write_tab.c	Write tabulated 1D or 2D ascii data files
write_vtk.c	Write VTK data